Comments (4)
hpliner
commented on August 17, 2024
Hi, what happens when you attempt to run it/continue your analysis? Off the top of my head I think that might work - I believe you're replacing everything necessary, but depending on which downstream steps you are hoping to use, they may or may not work.
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aleksandrPi
commented on August 17, 2024
It seems to work well, only thing that is not getting transferred is the branch-points from the old trajectory, I could not find where they are contained...
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hpliner
commented on August 17, 2024
The branch points are stored in cds@auxOrderingData, might try transferring that as well
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hpliner
commented on August 17, 2024
Going to close, let me know if you have further issues
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Related Issues (20)
- interpretation of generate_ccans output HOT 1
- reduceDimension:Error in if (any(i < 0L)) { : missing value where TRUE/FALSE needed HOT 3
- every link duplicated in the results HOT 1
- no transcrition structures in plot_connection HOT 1
- run_cicero error HOT 2
- length of Dimnames[[1]] (115668) is not equal to Dim[1] (147955) HOT 2
- Hi, question about start using cicero HOT 2
- Questions about make_cicero_cds function HOT 1
- error about run_cicero HOT 2
- Plot_connection axis label HOT 1
- run_cicero Peak1 include NA HOT 2
- generate_ccans() Error: caught segfault: address 0x55e403466ee4, cause 'memory not mapped' HOT 3
- make_atac_cds() does not generate cell_data_set object HOT 1
- Peak file for generating CDS HOT 1
- While running code "run_cicero", R studio server will terminate!! HOT 2
- I can't run the run_cicero!!! HOT 3
- practical suggestions to avoid an abrupt termination
- Problem installing cicero in CentOS 7.9
- Motif enrichment in the co-accessible sites
- error with run_cicero function
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