cannot go through reduceDimension() about cicero-release HOT 4 CLOSED

Thanks for the reply. No, I tried to install cicero monocle3 version in both server and on my own Mac system all failed. As cicero monocle version worked, I have the expectation to go through this version if could add some cutoff before run reduce dimension step? The error I met for monocle3: On server: devtools::install_github("cole-trapnell-lab/cicero-release", ref = "monocle3") ERROR: dependency ‘monocle3’ is not available for package ‘cicero’ * removing ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/cicero’ Error: Failed to install 'cicero' from GitHub: (converted from warning) installation of package ‘/var/folders/wk/lz78d33s61v7sd01z6495q340000gp/T//RtmpnX8dli/file148a4dddcd57/cicero_1.3.4.8.tar.gz’ had non-zero exit status devtools::install_github('cole-trapnell-lab/monocle3') take quite some time after check step, always get stuck during the installation configure: error: gdal-config not found or not executable. ERROR: configuration failed for package ‘sf’ install.packages("sf") configure: error: gdal-config not found or not executable. ERROR: configuration failed for package ‘rgdal’ On Mac laptop: just get stuck somewhere after the checking step.