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Christine Liu's Projects

cdna_cupcake icon cdna_cupcake

Miscellaneous collection of Python and R scripts for processing Iso-Seq data

complex-upset icon complex-upset

A library for creating complex UpSet plots with ggplot2 geoms

exonjunction icon exonjunction

R script for visualizing exon-exon junctions in genomic sequencing reads

isoseql icon isoseql

Database tool for comparing across many Iso-Seq runs analyzed through SQANTI3

somaticcnvpipeline icon somaticcnvpipeline

Pipeline for somatic CNV detection from single-cell whole-genome sequencing data of non-cancerous mouse or human tissue.

sqanti3 icon sqanti3

Repository of SQANTI3 tool for Quality Control of Long-Read Defined Transcriptomes

varccs icon varccs

Variant Calling Tool for Circular Consensus Sequencing

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