choishingwan Goto Github PK

bbs

Bio Bank Simulator. A simulation software for generating phenotypes from UK biobank data

biased_sampling

bigparallelr

Parallel tools in R

bigsnpr

R package for the analysis of massive SNP arrays.

choishingwan.github.io

Personal Website

curateddatabase

This is for putting all the curated data base information

esnp-sets

flashpca

Fast Principal Component Analysis of Large-Scale Genome-Wide Data

greedyrelated

Script for greedily remove related samples

lassosum

LASSO for GWAS with summary statistics

ldpred

mio

Cross-platform C++11 header-only library for memory mapped file IO

misc

Collection of random scripts

omega-project

plink-ng

A comprehensive update to the PLINK association analysis toolset. Beta testing of the first new version (1.90), focused on speed and memory efficiency improvements, is finishing up. Development is now focused on building out support for multiallelic, phased, and dosage data in PLINK 2.0.

prs-tutorial

A tutorial on how to run basic polygenic risk score analysis

prscsx

Cross-ethnic polygenic prediction

prsice

A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores

prsice-paper-script

Script used for performing simulation presented in the PRSice-2 paper

reselect

A helper tool to extract sample relatedness from huge relatedness matrix and also calculates the mean relatedness among the selected samples

rna-seq-analysis

The analytic pipeline used for RNA Sequencing

shrek

The SNP Heritability and Risk Estimation Kit

thesis

This is the repository of my thesis, try to use git to keep version control

uk-biobank-piplines

Pipelines for processing the UK biobank data

ukb_process