chipstewart Goto Github PK
Name: Chip Stewart
Type: User
Company: Broad Institute
Bio: Chip off the old block with a chip on his shoulder. Loads of baggage from the 60's.
Location: Boston
Chip Stewart's Projects
breakpointer_fix_sample
consensus_fix_maf
add swissprot_acc_id and non-empty i_t_ALT_F1R2 and i_t_ALT_F2R1 fields to rebc consensus maf
consensus_svs
damage
fake_protein_change
add/remove fake protein_change to mafs for any devious programs that check for protein_change but don't use the information
gatk4_m2_maflite
convert M2 vcf file to a maflite tsv file
manta_workflow
Illumina manta workflow for FIrecloud
mutationvalidator
oldspan
Genomic Structural Variation detection tool for paired-read sequence data
rebc_sv_consensus_filter
rebcwgs
REBC WGS pipepette workflow
spanner
spanner2
Developement Spanner code
strelka_workflow
tsvutils
tsv file utility python scripts
vcfs2maf
Merge M1 and M2 vcfs into a maflite
wig2coverage
Mutect1 wig covered bases file + target bed -> annotated bed + coverage summary
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