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3dtumorsimulator

simulated the spatiotemporal dynamics of a multicellular tumor using a three-dimensional (3D) agent-based model, in which the cells in the tumor are represented as interacting objects. In this model, the cells grow stochastically as a function of time and divide upon reaching a critical size. The cell-to-cell interaction is characterized by direct elastic and adhesive forces. We also consider cell-to-cell and cell-to-matrix damping as a way of accounting for the effects of friction experienced by a moving cell because of other cells and by the extracellular matrix (ECM) (or collagen matrix), respectively. Each cell is modeled as a deformable sphere with a time-dependent radius. Several physical properties, such as the radius, elastic modulus, membrane receptor and ligand concentration, and adhesive interaction, characterize each cell.

action-angle

A calculator of anharmonic oscillator periods in C

annealing

A project for studying simulated annealing in C

automake-learning

learning how to use GNU autotools

bluez-headphones

bluetooth headphone reconnector

cgir

A simple web application that reads plain text files

combinatorics

conky_spacepanel

Scripts to integrate aa (astronomical almanac) with conky

crc_initiation

extempore

A cyber-physical programming environment

hook-length

hypergeometric

A C project to compute hypergeometric series

methodcomparison

pasmix

Creates a virtual sink in pulseaudio to mix application audio and microphone audio

picard

Numerical approximations of Picard iteration in C

postscript-scm

A simple postscript header for Chicken Scheme.

slides

talk slides

squares

Scheme project to find integers that cannot be expressed as the sum of two squares

thuemorse

tone_generator

Generates PCM data from specified special functions

tumblingcancer

A ground-up rewrite of a much larger project from my thesis. This is a simulation of a lattice model of metastatic cancer that includes simple tumour-tumour interactions.

vimpad

vim bindings for a gamepad controller

voiceshifter

Bend your voice in live chat and recordings