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ailearning

AiLearning: 机器学习 - MachineLearning - ML、深度学习 - DeepLearning - DL、自然语言处理 NLP

andrew-ng-meachine-learning

coursera中Andrew Ng的meachine learning的所有编程测验的原文件

bactopia

A flexible pipeline for complete analysis of bacterial genomes

bamdst

a lightweight bam file depth statistical tool

bioworkflows

In-house computational biology workflows at Columbia Neurology

cfdnapipe

cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data

chao-s-house

data

dlwpt-code

Code for the book Deep Learning with PyTorch by Eli Stevens, Luca Antiga, and Thomas Viehmann.

duplex-seq-pipeline

A standalone end-to-end data analysis pipeline for Duplex Sequencing

duplex-sequencing

fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

fgbio

Tools for working with genomic and high throughput sequencing data.

gatk

Official code repository for GATK versions 4 and up

gencore

Generate duplex/single consensus reads to reduce sequencing noises and remove duplications

global-soil-virome

Supporting code for manuscript: "Ecological/environmental drivers of global soil virome diversity"

gut_virome_db

hello-algorithm

🙈🙉🙊 本项目包括：1、我写的三十万字图解算法题典 2、100 张 IT 相关超清思维导图 3、100 篇大厂面经汇总 4、各语言编程电子书 100 本 5、English version supported !!! 🚀🚀 国人项目上榜首不易，右上角助力一波！干就对了，奥利给 ！🚀🚀

impact-pipeline

Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay

intervar

A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline

llnext_pilot

We studied the dynamics of the maternal gut virome during and after pregnancy, the infant gut virome during early life, with a particular focus on the transmission of viral strains from mothers to their infants.

machine-learning-homework

Matlab Coding homework for Machine Learning

machine-learning-learning-notes

周志华《机器学习》又称西瓜书是一本较为全面的书籍，书中详细介绍了机器学习领域不同类型的算法(例如：监督学习、无监督学习、半监督学习、强化学习、集成降维、特征选择等)，记录了本人在学习过程中的理解思路与扩展知识点，希望对新人阅读西瓜书有所帮助！

metagenome_ana_pipeline

mgv

Supporting code for uncultivated gut virus manuscript

mutscan

Detect and visualize target mutations by scanning FastQ files directly

nanoseq

Analysis software for NanoSeq experiments

ngs-analysis

二代测序数据分析

pathongs

Pathogen NGS Documentary

pisces

Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.