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12-mouse-scrna

scRNA analysis codes

abatacept

Codes to analyze public single cell data

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

baozang-workshop-scrnaseq

Single cell RNA sequencing analysis course

beginning-perl-for-bioinformatics

Beginning Perl for Bioinformatics · 生物信息学 Perl 语言入门（中文版）

cykgxmchatgpt

A well-designed cross-platform ChatGPT UI (Web / PWA / Linux / Win / MacOS). 一键拥有你自己的跨平台 ChatGPT 应用。

ferret-single-cell-data-from-matsuzaki-lab

gpt_academic

为ChatGPT/GLM提供图形交互界面，特别优化论文阅读/润色/写作体验，模块化设计，支持自定义快捷按钮&函数插件，支持Python和C++等项目剖析&自译解功能，PDF/LaTex论文翻译&总结功能，支持并行问询多种LLM模型，支持清华chatglm等本地模型。兼容复旦MOSS, llama, rwkv, 盘古, newbing, claude等

harmony-rna-workflow

Workflow for Single-cell RNA Measurements using Seurat

irgsea

The integration of single cell rank-based gene set enrichment analysis

mousegerm_ddx43

All datasets include analyzed scRNA-seq, peak files called from eCLIP-seq datasets, and spliced/unspliced readouts of single cell. And codes for reproducing main results of study

ndp-ko-sc

Analysis code for collaboration with the Kuo lab. Single-cell analysis of NDP KO mice w/ and w/ out L6-F4-2 therapeutic agent.

paperwork-scrna-gse111527-mousesvz

Reanalyze of GSE111527 scRNA-seq data

pmnote

产品经理读书笔记

postnatalmousehypothalamus_singlecelltranscriptome

This repository includes data sets and related analysis for the postnatal hypothalamus of CRH-IRES-Cre mice that were sequenced using single nuclei RNA sequencing (snRNA-seq). By employing a retrograde Connect-seq approach, We investigate the properties of the hypothalamus neural stem cells and offers integrated reference dataset for validation

ruichenlabcodes

Single cell ATAC and RNA seq data analysis

scflow

Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.

scrna-seq_online

scrna.seq.course

Analysis of single cell RNA-seq data course

scrnaseq-prion-infection

Prion diseases are neurodegenerative disorders with long asymptomatic incubation periods, followed by a rapid progression of cognitive and functional decline culminating in death. The complexity of intercellular interactions in the brain is challenging to unravel and the basis of disease pathobiology remains poorly understood. In this study, we emp

scrnaseq_pg

CTRL vs IR mouse salivary glands

single-cell-analysis

Single Cell Data Analysis Workflow using the Seurat package in R, covering essential steps, such as quality control, clustering, cell type identification, differential gene expression analysis, and visualization.

single-cell-rna-seq

Complete single-cell RNA-seq analysis guidelines in R

single-cell-rnaseq-data-analysis

A collection of R scripts on handling scRNAseq data

some-many-books

12553

sung-ncvr-2022-scrna

Scripts for analyzing feature expression in endothelial cell subsets (lymphatic, sinusoidal, blood) from mouse embryo scRNAseq datasets.

tabula-muris

Code and annotations for the Tabula Muris single-cell transcriptomic dataset.