Comments (2)
When writing OME-XML to the ImageDescription tag, use metadata=None
in TiffWriter.save
to disable tifffile from also writing potentially conflicting JSON metadata. xtiff
does not do that, while aicsimageio
and apeer-ometiff-library
do.
from tifffile.
Probably your file contains multiple metadata formats describing the image shape as (1, 1, 47, 801, 800, 1) and (47, 801, 800). It's best not to create such files.
from tifffile.
Related Issues (20)
- Saving a 4D array where one of the dimensions is 3 or 4 moves that axis as last HOT 6
- Memory usage when writing tif with `tifffile.TiffWriter.write` HOT 2
- Modify image data, keeping everything else (metadata) intact HOT 1
- `ndarray.newbyteorder` is no longer available in NumPy 2.0 HOT 2
- Backwards compatibility issue with tile writing HOT 1
- question: is this package dependent on Libtiff? HOT 1
- saving a imagej hyperstack with a single channel removes the channel number form the tiff metadata HOT 2
- Running tests or linters on Github actions HOT 1
- Create svs file with image pyramid, label and macro in tifffile? HOT 3
- imread specify channels HOT 2
- Writing ome.tiff HOT 1
- API for deleting tiff tags HOT 1
- How to compress 10GB tiff? HOT 1
- Remove Specific Level HOT 1
- KeyError on write_fsspec of ZarrTiffStore HOT 2
- Limitations of Python 2.7 version HOT 1
- accessing Sentinel-1 SLC tiff measurement through S3 procotol HOT 2
- NumPy 2.0 support HOT 2
- IndexError: index 1 is out of bounds for axis 0 with size 1 HOT 3
- add a spot color channel HOT 1
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