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Cassandra's Projects

crshr icon crshr

Functions for analyzing data from a material testing machine in R

csrecon icon csrecon

A set of functions to reconstruct 2D images of a cleared and stained specimen as a 3D object

ctgalaxy icon ctgalaxy

Scripts for working with data from Slicer 3D

elongatefishskinmorphandmech icon elongatefishskinmorphandmech

Code and data for the manuscript titled: "The functional fabric of fish skin fibers: Collagen fiber geometry contributes to mechanics and kinematics in six species of elongate fishes"

fractalstars icon fractalstars

Code meant to calculate the fractal number for CT scans of seastars

kinebits icon kinebits

Bits of code to help measure kinematics and other locomotion related things

pholines icon pholines

code for tracking midlines of moving animals

rtimulib icon rtimulib

RTIMULib is a C++ and Python library that makes it easy to use 9-dof and 10-dof IMUs with embedded Linux systems (especially the Raspberry PI and Intel Edison!)

slicerbiomech icon slicerbiomech

Extension for the collection and analysis of biomechanical data from 3D specimen data

twisting icon twisting

Code for calculating twisting motion in fish bodies and tails during swimming

wobble icon wobble

Uses video and images of an elongate fish to calculate lateral rotation (Wobble) of a fish body while swimming.

zhoudonatelli2023 icon zhoudonatelli2023

Code for data analysis and figure production for Zhou, Donatelli, et.al. 2023

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