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Charlotte Darby's Projects

10xwgs icon 10xwgs

Utilities for processing 10X linked-read WGS data

bamsurgeon icon bamsurgeon

*10X Genomics haplotype-aware SNV mode* \\ tools for adding mutations to existing .bam files, used for testing mutation callers

dwgsim icon dwgsim

Whole Genome Simulator for Next-Generation Sequencing

genomicsjc icon genomicsjc

Johns Hopkins University student-led genomics paper discussion group

jhuheart17 icon jhuheart17

Course webpage for EN.500.111 HEART: Exploring algorithms for hard problems in computer science (Fall 2017)

mash icon mash

Fast genome and metagenome distance estimation using MinHash

qtip icon qtip

Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities

qtl-exe icon qtl-exe

Term project for EN.600.649: Computational Genomics: Applied Comparative Genomics, Spring 2017

samovar icon samovar

Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters

vargas-experiments icon vargas-experiments

Experiments for the Vargas paper (software at https://github.com/langmead-lab/vargas)

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