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diogomart avatar diogomart commented on July 28, 2024

Hi,

Vina only works with python3, not with python2.
See here for more information: https://autodock-vina.readthedocs.io/en/latest/installation.html#python-bindings

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jmechua-itsrdc avatar jmechua-itsrdc commented on July 28, 2024

Hi,

My python version is 3.7.11.

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jmechua-itsrdc avatar jmechua-itsrdc commented on July 28, 2024

So should I use python3 setup.py install instead?

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diogomart avatar diogomart commented on July 28, 2024

The error you posted occurs because the sep argument is unknown to the print function in python 2. If by typing python you get python 3, there should be no need to type python3.

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jmechua-itsrdc avatar jmechua-itsrdc commented on July 28, 2024

When I type python --version I get the Python 3 version. Even the conda environment where vina directory is located is using Python 3. I am not exactly sure what went wrong along the way.

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diogomart avatar diogomart commented on July 28, 2024

I have no idea about what might be happening. Please post here when you find out, I'm curious about the mysterious ways of conda/python :-)

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jmechua-itsrdc avatar jmechua-itsrdc commented on July 28, 2024

The installation went successfully after I used python3 instead of python (equivalent to python2). However, when I tried calling vina, there was no vina.

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jeeberhardt avatar jeeberhardt commented on July 28, 2024

Hi,

Yes, this is normal. The python bindings and binary installations are still two separate processes..

Best,

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diogomart avatar diogomart commented on July 28, 2024

@jmechua-itsrdc the command line executables are available here for download: https://github.com/ccsb-scripps/AutoDock-Vina/releases

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