Comments (2)
Documentation updated in commit 957c354: https://autodock-vina.readthedocs.io/en/latest/docking_basic.html#preparing-the-ligand
from autodock-vina.
We dropped that option in meeko. Now hydrogens are always added. We got to update the docs now. Thanks for reporting!
from autodock-vina.
Related Issues (20)
- Covalent Docking Broken HOT 7
- Valgrind reports leak in ScoringFunction
- An internal error occurred in ../../../src/lib/tree.h(101) HOT 4
- Using autobox in a docking search HOT 1
- Vina not producing complex structures after running HOT 8
- Internal error running vina HOT 1
- Error while running Vina for multiple ligand docking HOT 7
- Error- Insufficient memory HOT 3
- error while running AutoDock Vina (batch ligand) HOT 5
- Ligand(s) was(ere) not initialized. HOT 3
- converting pdbqt files to sdf when not prepared with Meeko HOT 1
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- Autodock vina error ------ "killed" while running HOT 1
- Flexible hydrated docking
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- What is the difference between ADFR and flexible docking using vina? HOT 2
- prepare_receptor causes `ValueError: Could not find atomic number for Hn Hn` HOT 1
- Running Autodock Vina with batch Ligand occur error basic_string::_M_replace_aux HOT 3
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