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autowrap

Generates Python Extension modules from Cythons PXD files

cmaple

MAximum Parsimonious Likelihood Estimation in C/C++

comet

An tandem mass spectrometry (MS/MS) sequence database search tool.

comet-ms

Inofficial fork from comet search engine source

compbio-base

A C# solution with projects containing utiliy classes that are used e.g. in MaxQuant and Perseus

contrib

The OpenMS contrib libraries

fido

Fido protein inference tool, adapted for cross-platform build

heaptrack

A heap memory profiler for Linux

meteorite

msgfplus

MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence database.

msproteomicstools

Some hopefully useful tools for mass spectrometry applied to proteomics

mzqc

Standard format development for control of quality

nitpick

This repo maintains a working version of Nitpick

obi

The Ontology for Biomedical Investigations

ontologyindex

:exclamation: This is a read-only mirror of the CRAN R package repository. ontologyIndex — Reading Ontologies into R

openms

The codebase of the OpenMS project

openms-docs

OpenMS Documentation.

proc-profile

Command Line Process Profiling Tool by David Catt

psi-ms-cv

HUPO-PSI mass spectrometry CV

ptxqc

A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant

ptxqc-shinywebinterface

A Webserver for PTXQC using R-Shiny

ptxqc_data

Example data for PTXQC

qcmetrics

An R framework for quality control

simde

Implementations of SIMD instruction sets for systems which don't natively support them.

sqlitecpp

SQLiteC++ (SQLiteCpp) is a smart and easy to use C++ SQLite3 wrapper.

tutorials

Tutorials as used in the user meetings. (Please assign a git tag for the revision used for the UM)

tutorials-1

Tutorials for bioinformatics.

value-category-cheatsheet

A C++14 cheat-sheet on lvalues, rvalues, xvalues, and more

wintime

an implementation of /usr/bin/time for Microsoft Windows