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followers: 23.0 following: 29.0 repos: 19.0 gists: 0.0

Name: Carlos Biagi Jr

Type: User

Company: Dana-Farber Cancer Institute

Bio: Computational Postdoc at Dana-Farber Cancer Institute/Harvard Medical School | PhD in Genetics | Single-cell analysis

Twitter: cbiagii

Location: Boston

Blog: http://cbiagii.github.io

Hi folks, I'm Carlos!

Computational Postdoc at @DanaFarber @harvardmed | PhD in Genetics | Single-cell analysis

I’m R, bioinformatics and single-cell enthusiast!

🔭 I’m currently a Computational Postdoc Fellow in Filbin Lab at Dana-Farber Cancer Institute, Harvard Medical School and Broad Institute
🌱 I’m currently learning everything
🥅 2023 Goals: Contribute more to Open Source projects

Carlos Biagi Jr's Projects

bioinformatics-one-liners

Bioinformatics one liners from Ming Tang

cetf

Repository for R package with an implementation of PCIT and RIF algorthms.

cetfdocker

Docker image for an implementation of PCIT and RIF algorthms in R

magic

Docker image for MAGIC (Markov Affinity-based Graph Imputation of Cells)

pancreas_ductal_scrnaseq

The following repository contains code for all scRNAseq analysis and visualization performed in the paper: Single cell resolution analysis of the human pancreatic ductal progenitor cell niche

scmatch

Docker image for scMatch: a single-cell gene expression profile annotation tool using reference datasets

scrnaseq-bit

A docker image with R packages to analyze Single-Cell RNA-Seq data

scvelo

RNA Velocity generalized through dynamical modeling

The following repository contains code for all scRNAseq analysis and visualization performed in the paper: "Multidimensional Single-Nuclei RNA-Seq Reconstruction of Adipose Tissue Reveals Mature Adipocyte Plasticity Underlying Thermogenic Response

tactile

Tactile is a Jekyll theme for GitHub Pages

target-prediction

A docker image with tools for predicting lncRNA and miRNA targets

velocyto.r

RNA velocity estimation in R

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