cauyrd Goto Github PK

an-introduction-to-applied-bioinformatics

Interactive lessons in bioinformatics.

anomalydetection

Anomaly Detection with R

applied-computational-genomics

Applied Computational Genomics Course at UU: Spring 2017

ar-gsr

arser

Periodicity detection algorithm for evenly spaced circadian gene expression data

awesome-nanopore

A curated list of awesome nanopore analysis tools.

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

badread

a long read simulator that can imitate many types of read problems

bcbio-nextgen

Validated, scalable, community developed variant calling and RNA-seq analysis

biotools

A list of useful bioinformatics resources

books

整理一些书籍 ~

chip-seq-analysis

chipdenovo

de novo assembly program for chip-seq

d2l-zh

《动手学深度学习》：面向中文读者、能运行、可讨论。中英文版被55个国家的300所大学用于教学。

deepconsensus

DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.

deeplearning

深度学习入门教程&&优秀文章&&Deep Learning Tutorial

deeplearning-500-questions

深度学习500问，以问答形式对常用的概率知识、线性代数、机器学习、深度学习、计算机视觉等热点问题进行阐述，以帮助自己及有需要的读者。 全书分为18个章节，50余万字。由于水平有限，书中不妥之处恳请广大读者批评指正。 未完待续............ 如有意合作，联系[email protected] 版权所有，违权必究 Tan 2018.06

deeplearning-biology

A list of deep learning implementations in biology

deeplift

Public facing deeplift repo

dna-seq-analysis

egonet

Subnetwork selection from large-scale biological network based on gene expression data

emory

scripts used for NGS data analysis @ Emory

firstpaper

fluff

Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing experiments.

genvisr

Genome data visualizations

git-workflow

Tool to visualize your git workflow, in a pretty graph

go

The Open Source Data Science Masters

gsir-te

Getting Started in R -- Tinyverse Edition

hicplotter

“When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau

hpeak

A HMM-based algorithm for defining enriched regions from ChIP-seq data