Comments (3)
Or maybe we should just have a single "score" that the log-likelihood of the best alignment or the log-weight of a sampled alignment?
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Also, should we replace 'aln' with 'alignment'? Or keep it brief to save on file size?
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Or maybe we should just have a single "score" that the log-likelihood of the best alignment or the log-weight of a sampled alignment?
I think only having the log score makes sense. Either "score" or "log_score" works, depends if we want to be explicit that the score is in log space.
Also, should we replace 'aln' with 'alignment'? Or keep it brief to save on file size?
'alignment' might be better, it's only a few extra characters.
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Related Issues (6)
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