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arvados

An open source platform for managing and analyzing biomedical big data

bcbio-nextgen

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

bgee_pipeline

Source code of the Bgee pipeline used to build the Bgee database

bgeedb_r

Source code of the R packge BgeeDB to use data from the Bgee database

bioperl.github.io

The BioPerl Web site: http://bioperl.org

complete-python-3-bootcamp

Course Files for Complete Python 3 Bootcamp Course on Udemy

covidcertificate-documents

Documents related to covid certificate system in Switzerland

cristina_arjun_carissa_assessment

cromwell

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

dbi

DBI - The Perl 5 Database Interface

edss_dep_framework

Integrated framework for EDSS deployment

enrichment-analysis-training

Course material for Enrichment analysis course by SIB

ensembl-vep

The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants

flask-restplus

Fully featured framework for fast, easy and documented API development with Flask

gallus_gallus_expr_advanced_all_conditions.tsv.gz

BGee_Bird_Project

genozip

A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too

git_demo

SIB ETH Training 1

intermediate-python-training

introduction-to-clinical-bioinformatics

kat

The K-mer Analysis Toolkit (KAT) contains a number of tools that analyse and compare K-mer spectra.

latex2e

The LaTeX2e kernel

learn-wdl

Educational materials for learning WDL

luigi

Luigi is a Python module that helps you build complex pipelines of batch jobs. It handles dependency resolution, workflow management, visualization etc. It also comes with Hadoop support built in.

marshmallow

A lightweight library for converting complex objects to and from simple Python datatypes.

matplotlib

matplotlib: plotting with Python

msa_project

Sprint_3 Team Coding Project

myapp

R Shiny ETH

pyshiny-vscode

R Shiny

python-trainig

rest_variantvalidator

REST Interface for VariantValidator. Includes docker container