In plot_latent_variables a MOBSTER FIT is passed as m

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Can't subset columns that don't exist about mobster HOT 4 CLOSED

caravagnalab commented on June 15, 2024

Can't subset columns that don't exist

from mobster.

Comments (4)

caravagn commented on June 15, 2024

I am sorry but cannot replicate the error. I am running

data('fit_example', package = 'mobster')

mobster::Clusters(fit_example$best)
mobster::plot_latent_variables(fit_example$best, cutoff_assignment = 0)

which works. Can you tell me where you get the crash?

from mobster.

luca-dex commented on June 15, 2024

Try rexecuting the code of a2_plotting.Rmd with the installed version of mobster, not with document().

This is how the best_fit is generated:

example_data = Clusters(mobster::fit_example$best)

# Drivers annotation (we selected this entries to have nice plots)
drivers_rows = c(2239, 3246, 3800)

example_data$is_driver = FALSE
example_data$driver_label = NA

example_data$is_driver[drivers_rows] = TRUE
example_data$driver_label[drivers_rows] = c("DR1", "DR2", "DR3")

# Fit and print the data
fit = mobster_fit(example_data, auto_setup = 'FAST')

best_fit = fit$best

And then:

mobster::plot_latent_variables(best_fit, cutoff_assignment = 0)

You can see the error on all the environment in the actions

from mobster.

caravagn commented on June 15, 2024

I am not sure @luca-dex. I have done a fresh clean install of the development repo, restarted my R session, and run this smoothly.

data("fit_example", package = 'mobster')
example_data = mobster::Clusters(mobster::fit_example$best)

drivers_rows = c(2239, 3246, 3800)

example_data$is_driver = FALSE
example_data$driver_label = NA

example_data$is_driver[drivers_rows] = TRUE
example_data$driver_label[drivers_rows] = c("DR1", "DR2", "DR3")

# Fit and print the data
fit = mobster::mobster_fit(example_data, auto_setup = 'FAST')

best_fit = fit$best
mobster::plot_latent_variables(best_fit, cutoff_assignment = 0)

from mobster.

luca-dex commented on June 15, 2024

Fixed with 378c6f0

from mobster.

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