callumparr Goto Github PK
Type: User
Bio: wet scientist trying to work with big ol' data
Location: Tokyo
Type: User
Bio: wet scientist trying to work with big ol' data
Location: Tokyo
A curated list of awesome nanopore analysis tools.
Computational pipeline for calling consensi on R2C2 nanopore data
Splitting of sequence reads by internal adapter sequence search
Quality and length filter for FastQ data
We developed a protocol of in situ high throughput multi-way contact long read Pore-C sequencing (in situ HiPore-C), a strategy that integrated multi-fragment ligates preparation with third-generation sequencing technology. With HiPore-C approach, we could explore higher-order chromatin interaction genome-widely.
Laboratory journal of Emil
Version II of Mandalorion
Nextflow pipeline for analysis of direct RNA Nanopore reads
Data and analysis for NA12878 genome on nanopore
EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2
bioinformatics tutorial demonstrating a simple workflow for cDNA based differential gene expression using minimap2, Rsubread and DESeq2
A bioinformatics tutorial demonstrating the application of long read cDNA sequence data for the identification of differentially expressed genes and transcripts
Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data
Pipeline for calling poly(A) tail lengths from nanopore direct RNA data using nanopolish
Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads
adapter trimmer for Oxford Nanopore reads
A tool to identify full length cDNA reads
RAGE-seq scripts
Read Assignment, Mapping, and Phylogenetic Analysis in Real Time
RNA-seq workflow for differential transcript usage following Salmon quantification
Deezer source separation library including pretrained models.
SquiggleKit: A toolkit for manipulating nanopore signal data
Training models for basecalling Oxford Nanopore reads
Technology agnostic long read analysis pipeline for transcriptomes
References and analyses for updated TALON paper
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.