caljohnson Goto Github PK

astrocyte_ion_concentrations

Astrocyte model to examine the level of astrocyte calcium activity needed to have a significant impact on extracellular concentrations, and hence, the excitability of nearby neurons.

bandits

Python library for Multi-Armed Bandits -Multifidelity extension

caljohnson.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

celegans_research

computational_pop_bio

R programming work and assignments for Computational Methods in Pop Bio (Winter Quarter 2017 course).

large_scale_matrix_computations

Code and homework for Numerical Methods: Large-Scale Matrix Computations, Winter quarter 2018.

lecture_notes

Scans of all notes from lectures in my applied mathematics PhD program at UC Davis.

mf_ma_bandits

Multi-fidelity multi-armed bandit classes and MF-UCB algorithm implementation.

neuromech_osc_model

neuromechanical_mechanisms_code

MATLAB code for Ph.D. dissertation and related paper.

numerical_pdes

Python programming assignments and TeX write-ups for Numerical PDEs class, Fall 2016.

numerical_pdes_2

Python routines and homework writeups for Numerical Solutions of Partial Differential Equations, quarter 2 Winter 2017.

oi_biostat_labs

R labs accompanying the OpenIntro Biostatistics textbook

old_io

tensorflow_work

Python programs with TensorFlow for machine learning practice/learning.

undergrad_thesis_code

Relevant MATLAB code used to generate figures and results for my undergraduate thesis.

xpp_work

Python routines for managing XPP-Auto figure data and other work.

xppy

XPPy is Python interface for Bard Ermentrout's XPP.