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assembly-hub-maker

A python script for making UCSC Genome Browser assembly hubs from NCBI data.

bme205

callable_sites_thing

ccgp-data-wrangling

ccgp_workflow

Snakemake+python workflow to highly parallelize variant calling in non-model organisms

circleseq

Primary analysis pipeline for ultra-accurate sequencing data

comppopgen_ms

Final version of MK pipeline from larger analyses in collaboration with Allison Shultz (ajshultz) & Tim Sackton (tsackton)

cool_encoder

crust

d4-format

The D4 Quantitative Data Format

discord_rps

Rock Paper Scissors Bot for Discord

litestar-fullstack

Litestar Fullstack Reference Application with Vue, Vite, and SQLAlchemy, Docker, Task Queues, and more!

mop

Simple tool for capturing alignment regions with sufficient quality for genotyping.

pyd4

The python binding for D4 format

recomb

rle-analysis-wdl

A WDL workflow for training run length encoding model on Nanopore data.

runlength_analysis_cpp

Building runlength frequency matrices for sequence data

sampletracker

slurm_buster

snakemake

This is the development home of the workflow management system Snakemake. For general information, see

snakemake-executor-plugin-google-lifesciences

A Snakemake executor plugin for google lifesciences.

snakemake-executor-plugin-googlebatch

Snakemake executor plugin for Google Batch (under development)

snakemake-github-action

A Github action for running a Snakemake workflow

snakemake-interface-monitor-plugins

snakemake-monitoring-plugin-wms

snakemake-storage-plugin-gs

A Snakemake storage plugin for Google Cloud Storage

track-hub-maker

A Snakemake workflow and associated scripts to make population genomic stat tracks for the UCSC Genome browser.

wolb-cov-workflow

wolb-sim