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nvdm

neural variational document model

openmeta-analyst-

intuitive software for advanced meta-analysis

pmcid_getter

a small tool for fetching pubmed central (PMC) IDs -- when available -- from either paper titles or PMIDs.

pubmedpy

a small library for fetching and encoding pubmed abstracts for input into classification tools (e.g., libsvm or Weka)

pymc-ordinal-regression

rationale-cnn

A keras implementation of our CNNs with rationales

rct-summarization-data

Data from our AMIA 2020 paper "Generating (Factual?) Narrative Summaries of RCTs: Experiments with Neural Multi-Document Summarization"

rob-2.0

Automated Risk of Bias Assessment, Redux (Outcome Specific)

rob-cnn

CNNs for risk of bias classification

robosum

(Narrative) evidence synthesis, automatically

robotreviewer-eval

robotscreen

robustness

code for robustness analysis of meta-analyses.

rrnlp

NLP for evidence-based medicine. https://www.robotreviewer.net/.

sample-size-extraction

seq2tree-mesh

sisyphus

one must imagine sisyphus happy

snowball

Code & data for the snowball project.

summary_annotation

tac-2014

Code for TAC shared task

transformers

🤗Transformers: State-of-the-art Natural Language Processing for Pytorch and TensorFlow 2.0.

umls_pico_tagging

w3phi-2015

Data used for our w3phi paper (at AAAI 2015).

war-on-cars