Comments (4)
Hello,
thank you for trying out powsimR!
scater changed its parameters for QC quality metrics. I have adapted my function call accordingly in the newest version (1.1.2). Feel free to give it another go and please tell me if you encounter other issues.
Kind regards
Beate
from powsimr.
Great it works now! Although I think powsimR no longer loads the scater package.
I get this error when running the simulateDE function:
Applying MAST for DE analysis on raw count data.
Error in assayNames(x) : could not find function "assayNames"
If I load library(scater) it works fine.
Thanks again. Feel free to close the issue.
Shawn
from powsimr.
Hello Shawn,
great to here!
Concerning the error message for MAST, can you send me the output of your sessionInfo() after library(powsimR)? I actually never used a call to assayNames nor scater in my wrapper for DE detection with MAST.
Which version of MAST and R do you have? I am on 1.4.1 for MAST and still 3.4.4 for R.
Kind regards
Beate
from powsimr.
from powsimr.
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