master had error, counts no error about genetherapypatientreportmaker HOT 3 CLOSED

@yhwu

did intSiteRetriever from db_schema was used?

e.g. devtools::install_github('BushmanLab/intSiteRetriever', ref='db_schema')

from genetherapypatientreportmaker.

master, from microb237 database, Chris?
error message:

67 GTSP0805-3 GTSP0805 pFR03 Tcells m36
68 GTSP0805-4 GTSP0805 pFR03 Tcells m36
Fetching unique sites and estimating abundance
Clustering by minimum overlap.
- Adding clustered value frequencies.
Adding clustered data back to psl.rd.
Picking best scoring hit to represent a cluster.
Cleaning up!
Error in [[<-(*tmp*, name, value = c(1, 2, 1, 2, 3, 5, 2, 2, 2, 2, :
2873 elements in value to replace 2872 elements
Calls: lapply ... getEstimatedAbundance -> $&lt;- -&gt; $&lt;- -> [[<- -> [[<-
Execution halted

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seems to be fixed by @cnobles?

from genetherapypatientreportmaker.