Comments (3)
@rickymagner Is there any chance you could look at this ?
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Hi, I'd like to take a look and help you with this. In order to do that, can you post the full command line prompt that you used to run GenotypeConcordance
? If you have a snippet of the call and truth VCFs that would be helpful. For example, the snippet you posted has a sample named "call" and "truth", and it looks like there are missing/ref GT calls in it that I imagine would confound the stats if you used that VCF in your command.
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