Comments (3)
SHuang-Broad
commented on August 26, 2024
The alignment workflow now turns on -L by default.
We are unsure if the downstream tools are aware of the CG tag yet.
from long-read-pipelines.
kvg
commented on August 26, 2024
I may have broken this when the merge of the kvg_ont_fixes branch into master. We should update the AlignReads.Minimap2 task.
from long-read-pipelines.
kvg
commented on August 26, 2024
Done - by default we now supply the -L argument to minimap2, which writes long cigar strings to a special tag.
from long-read-pipelines.
Related Issues (20)
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