Comments (1)
should have been closed by #60
from long-read-pipelines.
Related Issues (20)
- Replace LRConvertBCF workflow with a more efficient and up-to-date solution
- CNV pipeline needs to finalize results
- Investigate if finalization steps could be improved with `gcloud storage cp`
- ONTProcessBasecall Input Issue
- update all pacbio software to those packaged in the SMRTLink release
- Make Finalize.wdl tasks volatile
- Long read pipeline Canu issue with Mouse Genome reference HOT 2
- Migrate all viable docker images to google artifact registry
- Workflow Documentation HOT 3
- Documentation for Epi and CNV pipelines
- Assembly pipeline output should give bgz files not gz files
- `lr-metrics` docker refers to a non-official build of GATK
- bump DV version to 1.6
- Make the finalization tasks take a manifest
- Update Dockerfiles for Faster Conda Dependency Resolution
- Use sysmetic monitor to check GCP's preemption rates HOT 1
- Install samtools with libdeflate enabled HOT 1
- Prep for SMRTLink v13
- API to pull WDL documentation from Dockstore to Terra
- Make preemption dependent on expected length
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from long-read-pipelines.