Comments (5)
(This may be a documentation issue if it is only included in fMRI task, which is correct)
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These are recommended in the context of fMRI task:
https://bids-specification.readthedocs.io/en/stable/04-modality-specific-files/01-magnetic-resonance-imaging-data.html#fmri-task-information
Are they being included when the MRI is not labelled task? Otherwise, I think the requirement here is the json helper is supposed to be edited to provide the missing fields before the BIDS is generated.
from brkraw.
I checked a couple .json for non bold scans, it seems that they were not included (in our example dataset). In either case, I think a default value that passes the validator should be generated automatically if user did not specify any value. I will look into it.
It's also a good idea to mention it in documentation as well.
from brkraw.
The CogAtlasID and CogPOID seems recommended not mandatory,
It may be resolved by updating
to be an empty string if this could work?
from brkraw.
You have to put something like "https://www.cognitiveatlas.org/fillYourID" to make it work. I made a PR for it.
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Related Issues (20)
- Current GitHub version fails to process using JSON HOT 14
- visu_pars file parsing error HOT 1
- 'VisuAcqGradEncoding' is not defined HOT 1
- brkraw tonii generates filenames with parentheses
- error with VisuAcquisitionProtocol
- Converting single-volume diffusion data fails
- Normalize b-vectors
- [Notice] Future Release Schedule and Invitation for New Maintainers HOT 3
- Getting parameters from the reco file HOT 1
- BIDS - Computation of SliceTiming HOT 2
- automated test in CI: bring them back online HOT 2
- modernize packaging
- add some style guide lines HOT 1
- duplicate "contributing" file
- automate the build of the docker image HOT 1
- use a citation.cff file to keep track of metadata to be ingested by zenodo upon release
- Sourcery refactoring suggestions HOT 1
- consider moving the doc within package repo HOT 1
- Fails conversion with tonii_all HOT 7
- Jupyter notebook tutorial gives FileNotValid error HOT 2
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