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aapm_summer_school_court_workshop

aapm_summer_school_workshop

This is a deformable registration code, adapted from the voxelmorph code available here: https://github.com/voxelmorph/voxelmorph

aapm_summerschool_jinzhong_workshop

addingdicommatrixtag

This code is written for Svetlana's project, designed to add the tag 'PostDeformationMatrixRegistrationSequence' to the DICOM files

addingsimpleitkcsharpinstructions

Just a .md file to show the steps for adding CSharp ITK reference

anonymize_dicom

A simple tool to anonymize DICOM files

aperturecomplexity

Python 3.x port of the Eclipse ESAPI plug-in script used in the study : Predicting deliverability of volumetric-modulated arc therapy (VMAT) plans using aperture complexity analysis

aw_liver_lobes_to_raystation

Code for taking segmentations created on the AW and transforming them into Raystation segmentations

base_deeplearning_code

The base code that all of my deep learning projects will reference from

brachyringchecker

A scriptable way of checking to see if a Ring is present within the case, to ensure distal correction is applied

callbacks

cat_isoshifts

Create text files for shifts and Raystation code to import it

chung_lab_code

Code for the chung lab

complexity

Eclipse plug-in script for calculating aperture complexity metrics

copy-shared-google-to-colab

This will let you copy over a folder from a shared link to your own work station in google colab

copy_folders

Function to copy folders from one location to another

create_island_contour

create_rt_from_dicom_and_mask

This is for the creation of a Dicom_RT structure using a template RT structure, the dicom images, and a mask

createexportscript

Creates a text file of patient IDs, plan set ups, structure uids, dose uids, and image series uids

creating_tf_records_example

cv_and_biosketch

cyclical_learning_rate

Code adapted from https://github.com/bckenstler/CLR

data_generators

Data generators that I use

datasearcher

Tool for searching through data generated by the InfoStructure tool

deeplearningtemplate

deletefilesrapidly

dgx-commands

Basic commands that are useful while running the DGX

dicom_data_to_numpy_arrays

For parallel creation of RT structures into numpy arrays for deep learning training purposes

dicomparsercsharp

A C# class for parsing DICOM files based on series instance UID

dicomtemplatemakercsharp