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I have been working in Machine learning and Data science for several years. I have done my Ph.D. in Medical Imaging. I have gained practical experience working for a few IT companies as a consultant, data scientist, or research engineer. I focus on exploring interesting world problems and solving them with state-of-the-art techniques.

Academic track: I have published several journal articles and papers on international conferences such as ISBI, ICIP, ACCV, and MICCAI workshops. I am also a reviewer for these conferences and other IEEE journals. I was the main organizer of the ANHIR challenge.

ORCID ResearchGate

Developer track: I have created several open-source Python packages, and I am a leading contributor to PyTorch-Lightning and other Lightning projects. I also actively participate in other well-known projects like auto-sklearn, yolov5, dipy, etc., with writing code, reporting issues, building CI/CD, and reviewing PRs.

Manager track: I led a small team while developing a video analysis tool. I have been leading & managing the Lightning team responsible for our open-source projects.

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🌐 Get in Touch:

JirkaBorovec in/jirka-borovec jirkaborovec @jborovec jirka

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Jirka Borovec's Projects

attentiondeepmil icon attentiondeepmil

Implementation of Attention-based Deep Multiple Instance Learning in PyTorch

auto-pytorch icon auto-pytorch

Automatic architecture search and hyperparameter optimization for PyTorch

auto_ts icon auto_ts

Automatically build ARIMA, SARIMAX, VAR, FB Prophet and XGBoost Models on Time Series data sets with a Single Line of Code. Now updated with Dask to handle millions of rows.

bci-speller icon bci-speller

Interactive keyboard for EEG, using Brain-Control interface

birl icon birl

BIRL: Benchmark on Image Registration methods with Landmark validations

clam icon clam

Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering

cli-fire icon cli-fire

Python Fire is a library for automatically generating command line interfaces (CLIs) from absolutely any Python object.

cmd-tree icon cmd-tree

A command line tool for generating text-based representations of file hierarchies

cudf icon cudf

cuDF - GPU DataFrame Library

docker_sample icon docker_sample

This Docker image a i basic image with accent on automatic pushing to Docker Hub.

ecosystem-ci icon ecosystem-ci

Automate issue discovery for your projects against Lightning nightly and releases.

flaml icon flaml

A fast library for AutoML and tuning. Join our Discord: https://discord.gg/Cppx2vSPVP.

flexgen icon flexgen

Running large language models like OPT-175B/GPT-3 on a single GPU. Up to 100x faster than other offloading systems.

gitpython icon gitpython

GitPython is a python library used to interact with Git repositories.

gridcut-python icon gridcut-python

Python wrappers for the GridCut C++ library for solving graph cuts in grids

hatch icon hatch

Modern, extensible Python project management

histossl_scaling icon histossl_scaling

Code associated to the publication: Scaling self-supervised learning for histopathology with masked image modeling, A. Filiot et al., MedRxiv (2023).

ij-cmp-bia icon ij-cmp-bia

Extension for ImageJ (Fiji) by BIA segmentation methods as plugins and some other useful API for image segmentation.

imageai icon imageai

A python library built to empower developers to build applications and systems with self-contained Computer Vision capabilities

imbalanced-dataset-sampler icon imbalanced-dataset-sampler

A (PyTorch) imbalanced dataset sampler for oversampling low frequent classes and undersampling high frequent ones.

imgaug icon imgaug

Image augmentation for machine learning experiments.

joblib icon joblib

Computing with Python functions.

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