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drpreter

DRPreter: Interpretable Anticancer Drug Response Prediction Using Knowledge-Guided Graph Neural Networks and Transformer

kegg-kgml-parser

Python code to download and parse KEGG pathway kgml file

metheor

Ultrafast DNA methylation heterogeneity calculation from bisulfite alignments

ml_purity

neticspy

Python implementation of NetICS (Network-based Integration of Multi-omics data).

patient_stratification

Patient stratification for simultaneous learning of molecular subtype and survival outcome using genetic algorithm-based gene set selection

ssm

Supervised Subgraph Mining for Chemical Graphs

xmtagger

Python code for adding XM tag to bisulfite bam file.