Bohdan Khomtchouk's Projects
Solutions for the Advanced R Development book
R Shiny web application for aging-related diseases
Natural language processing of Gene Expression Omnibus data
AI assembly of bioNLP wordnets
Bohdan Khomtchouk's personal website
My contributions towards improving modern machine learning literature
Succinct way to call C from Python
Cardioinformatics: the nexus of bioinformatics and precision cardiology
Machine learning scripts/analyses to accompany manuscript entitled "Codon usage bias levels predict taxonomic identity and genetic composition" (for code re-use/reproducibility purposes)
Miscellaneous differential gene expression scripts in R
geneXtendeR analysis on 198 human histone modification ChIP-seq ENCODE datasets
geneXtendeR analysis on 547 ENCODE ChIP-seq datasets for both proximal and distal transcription factor (TF) binding peaks for all cell types
Super high performance interactive heatmap software
Worked example showing how to cluster and visualize flow/mass cytometry data using FlowSOM and Rtsne
PyPI package for traversing extremely large FTP directory trees
Source code to accompany manuscript entitled "Gaussian-distributed codon frequencies of genomes" (Khomtchouk & Nonner, 2019)
geneSpark is a bioinformatics software program written in Python and Apache Spark for big data epigenetic histone modification ChIP-seq analysis.
R/Bioconductor package for optimized functional annotation of ChIP-seq data
R package to provide gene transfer format files from commonly investigated model organisms in ChIP-seq studies
Calculate upcoming birthday dates of Github repos
Cross-platform GUI desktop application for making biological heatmaps
Some helpers for dealing with dbgap xmls
R web scraper download utility for links on HTML pages
rmarkdown template that supports customizable logo, company info, etc.
ChIP-seq/RNA-seq analysis software suite for gene expression heatmaps
An automated and more advanced and quick way of generating movie gifs
NERO-nlp is a PyPI package for biomedical Named Entity (Recognition) Ontology
One-stop shop for one-click NGS analyses from the command-line