Comments (3)
Hey,
Sorry for the very late response!
The parameter specifies how many threads are available for CPU intense tasks to control the parallelization of the algorithms. Besides that other thread might be occupied for IO or scheduling tasks. Besides that the JVM might also occupy threads e.g. for Garbage Collection.
However a continuous CPU load of 100% seems not normal. A typical reason for that might be a too small Heap Size. In such cases continuous garbage collecting may result in massive CPU load.
One way to reliably restrict the number of CPU cores of a JVM base software is to use some kind of virtualization (e.g. some container solution).
from sirius.
Is there a good value to set for the Heap Size? I guess this should be -Xms
, right?
from sirius.
Hey,
you could either use the environment variable SIRIUS_OPTS or modify the SIRIUS start script.
The parameter to set the max heap size is -Xmx
(e.g. -Xmx16G
)
A good value really depends on the data. But you should not use more than 60% or 70% of the available system memory so that there is some memory left for the ILP solver.
from sirius.
Related Issues (20)
- how to import raw data into Sirius HOT 1
- SIRIUS 5.6.3 Error when querying REST service HOT 1
- build error on fresh checkout HOT 4
- Export Issues with Sirius 5.8.3
- Error when storing custom db HOT 4
- Empty .csv file while trying to use the FBMN export HOT 2
- compound_identification.csv is missing HOT 1
- ftree-export got errors
- No web service connection HOT 1
- SIRIUS account for independent, nonprofit research institute
- sirius-network-connection HOT 1
- changing configuration
- Login and connection issues HOT 1
- unable to make Sirius use Gurobi solver
- Can not find `v5.8.6/sirius-5.8.6-linux64-headless.zip` HOT 2
- Hardware requirements HOT 3
- Question of `molecularFormula` and `precursorFormula`
- Incorrect Iron Mass
- Trouble with login: Command line doesn't log in, Interactive mode expires HOT 1
- How to invoke sirius.exe file from other application using the command line
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from sirius.