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anvio

An analysis and visualization platform for 'omics data

anvio-galaxy-ie

Galaxy Interactive Environment for Anvi'o

anvio2galaxy

bib-publication-list

Interactive publications lists with JavaScript + Bibtex

bioblend

A python library for interacting with CloudMan and Galaxy API

bioconda-recipes

Conda recipes for the bioconda channel.

bioconda-utils

Utilities for building and managing bioconda recipes

biopython

Official git repository for Biopython (converted from CVS)

biostar-central

BiosStar Q&A

blend4j

blend4j is a JVM partial reimplemenation of the Python library bioblend for interacting with Galaxy, CloudMan, and BioCloudCentral.

brew

🍺 The missing package manager for macOS (or Linux)

cargo-port

cache packages permanently

cd-hit-auxtools

Repository seeded with source code from http://weizhongli-lab.org/cd-hit/cd-hit-auxtools-v0.5-2012-03-07-fix.tar.gz

cgw-gh-tutorial-2019

chemdock

Galaxy Interactive Tool

clihelpparser

Library for reading the output from CLI help commands, and generating machine readable schemas (CWL etc)

cloudman

Easily create compute clusters on the Cloud.

coding_for_big_data

X things you should take into consideration if you code for big data analysis

conda-recipes

build and test recipes for conda

containers-rules-manuscript

Recommendations to containerize your bioinformatics software

cvmfs

The CernVM File System

dagobah-training

Training ground for aspiring Galaxy skywalkers

databaseapp

DataBaseApp

deep-review

A collaboratively written review paper on deep learning, genomics, and precision medicine

deepsearch-toolkit

Interact with the DeepSearch platform for new knowledge explorations and discoveries

docker-jupyter-notebook

:whale: :microscope: :books: Jupyter running in a docker container. This image can be used to integrate Jupyter into Galaxy

edirect

ephemeris

Library for managing Galaxy plugins - tools, index data, and workflows.

firepad

Collaborative Text Editor Powered by Firebase

freebayes

Galaxy wrappers for FreeBayes starting from version 0.9.14