blake-riley Goto Github PK
Name: Blake Riley
Type: User
Company: Keedy Lab, CUNY Advanced Science Research Center
Bio: Computational Structural Biologist ⋅ Postdoc @keedylab, CUNY ASRC
Twitter: blake_riley
Location: New York, NY
Blake Riley's Projects
coot
Software for macromolecular model-building
ghostium
A Ghost theme focused on content based on Medium design/ux
homebrew-bio
:beer::microscope: Bioinformatics formulae for the Homebrew package manager (macOS and Linux)
homebrew-core
🍻 Default formulae for the missing package manager for macOS
homebrew-science
Scientific formulae for the Homebrew package manager
lua-filters
A collection of lua filters for pandoc
md_manager
A simple interface for the setup, running and analysis of MD simulations
md_stageutil
A templated way for setting up cluster scripts and Molecular Dynamics (MD) simulations.
mdscripts
A collection of scripts for automated molecular dynamics production and analysis.
mdtraj
A modern, open library for the analysis of molecular dynamics trajectories
mmterm
View proteins and trajectories in the terminal
muscle
Multiple sequence alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and predicted structures.
pandoc-crossref
Pandoc filter for cross-references
phd_thesis_markdown
Template for writing a PhD thesis in Markdown
prody
A Python Package for Protein Dynamics Analysis
rosettafold2na
RoseTTAFold2 protein/nucleic acid complex prediction
squashfs-tools
tools to create and extract Squashfs filesystems
trajanalysistools
A VMD MD analysis toolkit
update-checker
zsh-config
My zsh configuration files
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