blachlylab Goto Github PK

annfield

Decode standardized VCF ANN fields

aws_notify

barcodeguru

bedcov-it

benchmark interval tree impl's with ersatz bedtools cov

blachlylab-old-github-io

blachlylab.github.io

https://blachlylab.github.io/

cadd2vcf

A tool to modify VCFs with CADD score output

cgranges

A C/C++ library for fast interval overlap queries (with a "bedtools coverage" example)

depthgauge

dhtslib

D bindings and OOP wrappers for htslib

dklib

D ports of klib algorithms

dksw2

D bindings for ksw2

dlang-static-docker

Build static D binaries with docker

dparasail

Dlang Bindings for the Parasail alignment library.

fade

Fragmentase Artifact Detection and Elimination

fastq-grow

Lengthen the sequences in FASTQ files

fishnet

Filter multi-read fast5 files

funmap

Fast unmap

gff3

A GFF3 parser in Go

gff3d

GFF3 parser in D / dlang

glo

Go Language implementation of LiftOver

intervaltree

Interval tree structures in D

koalas

Ad hoc Data Frames

maskerade

N mask BAM file according to BED regions

mucor

mucor2

mucor3

Parses VCF data into tabular spreadsheets and aggregates data by sample

nbib

MEDLINE/Pubmed .nbib format to CSL-JSON conversion

nbib-rs

MEDLINE/Pubmed .nbib format to CSL-JSON conversion

nopilesum

Alternative to GATK4's GetPileupSummaries using allele counting