Comments (2)
colleenXu
commented on June 26, 2024
@tokebe @andrewsu I think this bug fix can be deployed now for this upcoming release...
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colleenXu
commented on June 26, 2024
I've confirmed that things work as-expected after the Prod deployment
POST to https://bte.transltr.io/v1/smartapi/adf20dd6ff23dfe18e8e012bde686e31/query (Prod instance, Multiomics drug-repsonse only through BTE)
{
"message": {
"query_graph": {
"nodes": {
"n0": {
"ids":["PUBCHEM.COMPOUND:5291"],
"categories":["biolink:ChemicalEntity"],
"name": "imatinib"
},
"n1": {
"categories":["biolink:Gene"]
}
},
"edges": {
"e1": {
"subject": "n0",
"object": "n1",
"predicates": ["biolink:physically_interacts_with"]
}
}
}
}
}
Response (multiomics-fix.json) has two separate edges, one for TTD and one for drugcentral
"95791a7a9661df24ea4774998fc53757": {
"predicate": "biolink:physically_interacts_with",
"subject": "PUBCHEM.COMPOUND:5291",
"object": "NCBIGene:3815",
"attributes": [
{
"attribute_type_id": "biolink:primary_knowledge_source",
"attributes": [
{
"attribute_type_id": "biolink:source_infores",
"value": "infores:ttd"
}
],
"value": "infores:ttd"
},
{
"attribute_type_id": "biolink:aggregator_knowledge_source",
"value": "infores:biothings-multiomics-biggim-drugresponse"
}
],
"sources": [
{
"resource_id": "infores:ttd",
"resource_role": "primary_knowledge_source"
},
{
"resource_id": "infores:biothings-multiomics-biggim-drugresponse",
"resource_role": "aggregator_knowledge_source",
"upstream_resource_ids": [
"infores:ttd"
]
},
{
"resource_id": "infores:service-provider-trapi",
"resource_role": "aggregator_knowledge_source",
"upstream_resource_ids": [
"infores:biothings-multiomics-biggim-drugresponse"
]
}
]
},
"3e5fb4a92bbbbe921a84a0c0193e5460": {
"predicate": "biolink:physically_interacts_with",
"subject": "PUBCHEM.COMPOUND:5291",
"object": "NCBIGene:3815",
"attributes": [
{
"attribute_type_id": "biolink:primary_knowledge_source",
"attributes": [
{
"attribute_type_id": "biolink:source_infores",
"value": "infores:drugcentral"
}
],
"value": "infores:drugcentral"
},
{
"attribute_type_id": "biolink:aggregator_knowledge_source",
"value": "infores:biothings-multiomics-biggim-drugresponse"
}
],
"sources": [
{
"resource_id": "infores:drugcentral",
"resource_role": "primary_knowledge_source"
},
{
"resource_id": "infores:biothings-multiomics-biggim-drugresponse",
"resource_role": "aggregator_knowledge_source",
"upstream_resource_ids": [
"infores:drugcentral"
]
},
{
"resource_id": "infores:service-provider-trapi",
"resource_role": "aggregator_knowledge_source",
"upstream_resource_ids": [
"infores:biothings-multiomics-biggim-drugresponse"
]
}
]
},
Closing issue, opening a new one on a more robust fix.
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