Comments (5)
Seems the reverse edge is not working.
biothings-explorer-trapi:qedge2btedge Filter criteria is: {"input_type":"Disease","output_type":"ChemicalSubstance","predicate":"treats"} +0ms
biothings-explorer-trapi:qedge2btedge Filter criteria is: {"input_type":"Disease","output_type":"ChemicalSubstance","predicate":"contraindicated_for"} +44ms
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contraindicated_by => contraindicated_for: currently fixed in MyChem.info SmartAPI
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The real problem is that we don't reverse the predicate.
it should be Disease => treated_by => ChemicalSubstance.
Need to implement edge reversal in BTE.
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#33 look for symmetric predicate from biolink model
#29 look for reverse predicate from biolink model
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Related Issues (20)
- Jmespath cleanup and followup
- BTE raising odd TypeError, not doing sub-queries for some automated test queries HOT 4
- Recognize MCQ queries and respond with HTTP 501
- Sprint 5: review all x-bte operations with KL/AT "not_provided", change to other terms if possible HOT 3
- Update Tests HOT 11
- Refinement of PFOCR Result-level Enrichment HOT 3
- Issue with logging of results HOT 6
- BTE creating self-edges via subclassing HOT 7
- Use globally-loaded metakg /v1/meta_knowledge_graph endpoint HOT 5
- Improve Redis memory management
- using query_id for creative-mode when input ID isn't the primary one HOT 6
- BTE receiving HTTP 400 from some BioThings APIs
- BTE OTel not properly carrying context between POST and EXEC
- not urgent: ideal KL/AT adjustments
- migrate to Multiomics CTKP, remove other clinicaltrials.gov-based x-bte operations HOT 11
- Pathfinder `dryrun` mode: showing what queries are created from the "template-generation"
- future: Pathfinder scoring HOT 1
- Ongoing Pathfinder improvements
- review translator resources in smartAPI for inclusion in BTE's API list HOT 1
- update "regulates" x-bte operations
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