biorabiei's Projects
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AntiCP2 is an updated version of AntiCP developed for predicting, designing and scanning anticancer peptides.
Antonie is an integrated, robust, reliable and fast processor of DNA reads
A curated list of awesome Bioinformatics libraries and software.
ļ£æ Now we have become very big, Different from the original idea. Collect premium software in various categories.
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your cold brew almond milk latte and read this.
Conda recipes for the bioconda channel.
Some Python/R/* scripts for bioinformatics
Tools making use of BiopLib
Config files for my GitHub profile.
A repository for all of my teaching material
Fast proteasomal cleavage detection. Apache-licensed.
CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.
circtools: a modular, python-based framework for circRNA-related tools that unifies several functionalities in a single, command line driven software.
Cleavage of polypeptide sequences
Colab management guidelines for Hertie classes
Making Protein folding accessible to all via Google Colab!
Machine Learning to Detect Cancer Biomarkers from RNAseq Data
protein interface prediction method
Code relating to the Coursera Bioinformatics Specialization as well as my own genetic algorithm experiment.
Jupyter notebooks that analyze COVID-19 time series data
Projections of COVID-19, in standardized format
A suite of utilities for converting to and working with CSV, the king of tabular file formats.