ERROR: Cannot find seed sequence in genome of reference species for Dracaena_cambodiana_DN10000_c0_g1_i1.p1! about fdog HOT 4 CLOSED

I'm sorry to see your reply just now. This problem has been successfully solved

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Please prefer to this wiki to make sure you have the correct input data for fDOG https://github.com/BIONF/fDOG/wiki/Input-and-Output-Files (and https://github.com/BIONF/fDOG/wiki/Use-standalone-version)

• For fdog.run, it must be a SINGLE sequence in FASTA format
• The reference species (specified with --refspec) must be present in the blast database directory

Also check this page https://github.com/BIONF/fDOG/wiki/How-fDOG-works to know the differences between core taxa and search taxa. I think you are mistaken between these, since you said that your reference species is Dracaena_cambodiana_DN10000_c0_g1_i1.p1 but you have set --refspec ARATH@3702@3.

from fdog.

@majssssa This issue is solved, right?

from fdog.

Nice! Then I will close it :)

from fdog.