biojno Goto Github PK
Name: Jamie Orr
Type: User
Company: The James Hutton Institute
Twitter: BioJNO
Location: Dundee
Jamie Orr's Projects
bamp
Barley Meiotic proteome data handling and visualisation
bantr
Scripts used in analysis and data vis of Barley Anther and Meiocyte Transcriptome (BAnTr)
codon_preserving_primer_design
A short collection of python scripts to: extract CDS prediction fastas using a list of IDs; find and return CDS from contigs with a user defined flanking region; and given a fasta file of CDS with or without flanking regions return a table of possible primers pre-frame, in-frame, and post-frame
des8
50K recombination analysis and plotting scripts for barley des8.l mutant and WT
hvst1
Scripts used in the analysis and visualisation of HvST1 expression, phylogeny, and function
kenyanpcn
Kenyan PCN project
kinfin
Taxon-aware analysis of clustered protein sequences
nsis-mapping
Mapping NSIS samples and Pasturia ZOTUs in R
pasteuria_nematode_metabarcoding
Pipeline for the analysis of paired end Illumina sequnce data of Pasteuria spp. and Nematode PCR products.
ppenetrans_genomics
Scripts used during Pasteuria Penetrans strain RES148 assembly and analysis
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