Comments (7)
@LiNk-NY Got it, my bad: somehow I've missed the message about <pkg>.BiocCheck
folder, even though I was expecting that there should be a more detailed log =/
Edit: ah, apparently I've used an older version and there was no such message there
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I switched to the latest version of BiocCheck (1.38.0), the problem is gone now, my apologies
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Resolved through properly annotating data set man pages with \docType{data}.
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I got the same problem recently, here is the report from the package submission: https://bioconductor.org/spb_reports/gatom_buildreport_20231006110519.html#lconway_check_anchor
* Checking man page documentation...
* WARNING: Empty or missing \value sections found in man pages.
First, for some reason this warning doesn't says for which objects the value section is missing.
Second, after some debugging it turned out, that the documentation for data was not skipped because there was no \format
annotation.
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Hi Alexey, @assaron
We have shortened the output to reduce the verbosity of the report.
You can run BiocCheck
locally and see the <pkg>.BiocCheck
folder for additional details.
Yes, you should have a \format
annotation in the documentation, see ?mtcars
for an example.
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I am experiencing the same problem for a data file, even though there is a \format
annotation in the .Rd file.
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Hi @sthawinke ,
Are you using a recent version of BiocCheck
?
You shouldn't get the message if you have a \format
tag. If you are, can you provide a reproducible example?
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Related Issues (20)
- False positive checking for value section in Rd files HOT 2
- Add WARNING if package uses .Rnw vignettes HOT 1
- What is codetoolsBioC ? HOT 1
- Clarification on the regex used for detecting installation (of R packages?) on the vignette HOT 2
- "Sweave Noweb syntax?" popup windows HOT 1
- Error when checking for deprecated package usage HOT 6
- Error in unloadNamespace(pkg_ns)
- include macros location when using Rdpack HOT 1
- False positive in .Rbuildignore check HOT 17
- False positive error about file sizes HOT 4
- BiocCheck() dies on some packages before completing HOT 2
- Addressing "Checking if other packages can import this one" errors when packages providing functions are imported in NAMESPACE HOT 2
- BiocCheck false positives
- Another set of packages that kill BiocCheck() before completion HOT 5
- bioc-devel mailing list check still not always accurate HOT 4
- False positive warning during BiocCheck - Bioconductor software dependencies HOT 6
- Stringent doi checking of CITATION in ` BiocCheckGitClone` HOT 1
- Typo HOT 1
- Rd files with \docType{data} or \docType{class} should not be required to have a \value section HOT 5
- duplicated check for Imports in DESCRIPTION but not in NAMESPACE HOT 1
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