biocaddie Goto Github PK

biocaddie-core-ui

The main web client and user interface for the total environment, that has access to all the services and maintains personalization with the user login functionality.

biocaddie-priors

Enables ElasticSearch scoring with two types of document priors.

datarank

DataRank algorithm based on active learning

dats

Repository for dereferenceable DatA Tag Suite (DATS) JSON schemas and context files

elasticsearch-queryexpansion-plugin

A simple ElasticSearch plugin wrapping around the search endpoint to provide Rocchio query expansion

es-index

Repository for collecting issues on the DDI ElasticSearch Index.

foundry-es

Biocaddie Data Processing Pipeline. A data ingestion pipeline that collects and transforms original metadata information to a unified metadata model, called DatA Tag Suite (DATS).

foundry-nlp-enhancer

NLP enhancer plugin for Foundry-ES pipeline management system. The service that enhances elasticsearch functionality with NLP elements.

isee-delve

Pilot Project 2.2 - Intelligent Search expansion and Visualization of Datasets (iSee-DELVE)

metadata-transformations

Repository for bioCADDIE metadata curation of repository configurations and metadata transformations

nlp-server

NLP-Server for bioCADDIE ingestion process. The NLP processing software that enhances the current elasticsearch data after ingestion.

pilot-project

prototype_issues

Used to report and track bioCADDIE prototype issues

term-builder

uiuc-biocaddie-pilot

BioCADDIE challenge

wg3-metadataspecifications

WG3 Metadata Specification