Question: the URI for the "core" LinkedSPL graph about bio2rdf-scripts HOT 4 CLOSED

Hi Rich! You can find our current guidelines for Bio2RDF URIs here: https://docs.google.com/document/d/1qXq27w_RER9Yjb9Z4WW8JmT09wWKGWX_Hbuhri4xQ9g/edit

in general, we use slash uris. our namespaces follow the form
http://bio2rdf.org/[prefix]:[identifier]
http://bio2rdf.org/[prefix]_vocabulary:[identifier] // for dataset-specific types and relations
http://bio2rdf.org/[prefix]_resource:[identifier] // for dataset-specific resources not identified by source

for graphs, we current just use a single graph name that follows the form:
http://bio2rdf.org/[prefix]_resource:bio2rdf-[prefix]-v[X]

from bio2rdf-scripts.

Hi Michel,

I am a programmer work for Dr.boyce on the project bio2rdf/linkedSPLs.

Should we name the URI like belows?

For graphs:
http://bio2rdf.org/linkedSPLs:xxx-xxx-xxxx
http://bio2rdf.org/activeMoiety:xxxxx
http://bio2rdf.org/adverseEvents:xxxxxxxxx
http://bio2rdf.org/pharmacogenomics:xxx-xxx-xxxx
http://bio2rdf.org/pDDI:xxxxxxxxxx

For relations:
PREFIX linkedSPLs_vocabulary: http://bio2rdf.org/linkedSPLs_vocabulary:xxxx

For reources that don't have identifier:
PREFIX linkedSPLs_resource: http://bio2rdf.org/linkedSPLs_resource:xxxx

Appreciate for any comments!

from bio2rdf-scripts.

Hi Yifan,
my preference is that you keep all of the URIs in a single namespace
(note: singularized & lowercase)
http://bio2rdf.org/linkedspl:XXXX

if the identifiers overlap in their lexical space, then add prefixes e.g.
am_ for active moiety, ae_ for adverse event, etc.

another option, is to use subnamespaces e.g.
http://bio2rdf.org/linkedspl.activemoiety:xxxx

but then we need to register each one in our life science registry [1] and
keep track that they are part of the same project

[1] tinyurl.com/lsregistry

m.

On Fri, Sep 5, 2014 at 11:53 AM, Yifan Ning [email protected]
wrote:

Hi Michel,

I am a programmer work for Dr.boyce on the project bio2rdf/linkedSPLs.

Should we name the URI like belows?

For graphs:
http://bio2rdf.org/linkedSPLs:xxx-xxx-xxxx
http://bio2rdf.org/activeMoiety:xxxxx
http://bio2rdf.org/adverseEvents:xxxxxxxxx
http://bio2rdf.org/pharmacogenomics:xxx-xxx-xxxx
http://bio2rdf.org/pDDI:xxxxxxxxxx

For relations:
PREFIX linkedSPLs_vocabulary:
http://bio2rdf.org/linkedSPLs_vocabulary:xxxx

For reources that don't have identifier:
PREFIX linkedSPLs_resource: http://bio2rdf.org/linkedSPLs_resource:xxxx

Appreciate for any comments!

—
Reply to this email directly or view it on GitHub
#397 (comment)
.

from bio2rdf-scripts.

Got it. Thanks for your explanations. I will implements these URI changes ASAP.

from bio2rdf-scripts.