Comments (3)
make VERBOSE=1 -j4
causes the gcc command lines to be reported (thanks stackoverflow).
The (first) gcc command that is failing for me is /usr/bin/c++ ... -std=gnu++1z ...
. From what I find via google, gnu++1z
is a synonym for c++17
.
FWIW /usr/bin/c++ --version
reports c++ (Ubuntu 5.4.0-6ubuntu1~16.04.10) 5.4.0 20160609
Possibly also relevant: I don't have the Boost.Filesystem library. According to readme.md, I think that is OK, right?
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I fear gcc 5.4.0 is too old.
Boost.Filesystem is required OR a recent C++17 compiler with the std filesystem libraries.
I would suggest you upgrade to gcc7 or such.
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That's the same conclusion I've come to. gcc 5.4 appears to have been released a couple months before c++17 was officially standardized.
I don't have admin privs on the machine. I can build and install a newer version of gcc under my home directory. But my notes indicate I've only been successful doing that one time in five attempts (and the success was ten years ago, while this machine was still sand on the beach).
Anyway, not really a problem with this package. You should close this issue.
Thanks.
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Related Issues (18)
- Images for README.md
- Output of compact_construct extremely large HOT 1
- Error when using make -j4 HOT 3
- Query length limit HOT 6
- Provide the number of k-mers in the query HOT 3
- would it be hard to add k<31 support for .ctx files? HOT 4
- conda package HOT 9
- Steps for compiling COBS on server with old GCC/C++/C compiler
- Fails to compile on Ubuntu 18.04.2 HOT 2
- Support more fasta file extensions HOT 1
- COBS for 600K genomes HOT 3
- amino acid support HOT 3
- Fails to Compile (Errors during 'make') HOT 3
- Possible false negatives in query HOT 8
- Fail during make -j4 (GCC8 is used) HOT 1
- Failing to build COBS during make
- Build problems
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