Comments (4)
Note that I've started scoping out a design in this doc:
https://demo.hedgedoc.org/s/yvkCVA3kh#
from bids-validator.
Just to make sure it is mentioned.
There is already a python library that can help do a "superficial" validation of bids filenames:
https://github.com/bids-standard/bids-validator/tree/master/bids-validator#python-library
https://pypi.org/project/bids-validator/
Also if Node installation is source of trouble but docker is not, consider using the docker image of the validator:
https://hub.docker.com/r/bids/validator
from bids-validator.
We also have the start of a validator in the BIDS specification repository: https://github.com/bids-standard/bids-specification/blob/master/tools/schemacode/bidsschematools/validator.py
This is installed with the Python package bidsschematools
. Right now, it's just a Python interface, and it only does filename validation. It's been written toward the DANDI archive's use for BIDS validation, so the API may need refinement to fit other use cases.
from bids-validator.
Thank you, @effigies. Looking forward to this tool. Please let me know if you need help with testing, brainstorming, etc.
from bids-validator.
Related Issues (20)
- Ignore all dot files for validation.
- ds000001-fmriprep hitting schema.rules.sidecars.entity_rules.EntitiesResMetadata Rule HOT 2
- ASL M0scan json "intended for": struggle with array of strings HOT 1
- Browser error since v1.13.0 HOT 1
- Software filter error for EEG file - yet software filter is defined HOT 2
- [BUG]? Python bids-validator returns true on non-bids folder names HOT 4
- ColumnMap errors if key is in prototypes. HOT 1
- Rework CONTRIBUTING:BEPs section for schema-driven approach
- [Docker] Everything is `NOT_INCLUDED` when symlinking subject directory HOT 2
- motion: adding SpatialAxes etc to JSON schema
- Cannot parse TSV file with column header "size" HOT 1
- Error 2: [Code 32] DWI_MISSING_BVEC and Error 2: [Code 33] DWI_MISSING_BVAL HOT 4
- Warn if files from the same file collection have different shapes HOT 1
- Validator crashes if .bidsignore is present HOT 2
- 3D DWI files produce are not marked as invalid, but fail VOLUME_COUNT_MISMATCH HOT 8
- PET / MRI entanglement broken, spooky action at a distance not observed
- BIDS Specification is different than bids-validator for non-parametric structural MR images HOT 2
- MEG empty files tests not covered by specificaiton.
- hed-validator version 3.13.0 HOT 5
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