build failed about compilednn HOT 6 CLOSED

Hi,
could it somehow be that CompiledNN was compiled with assertions disabled (Release-like) and main with assertions enabled (Debug-like)? That would perfectly explain the output, but seems very unlikely given your build commands. Could you check (using make VERBOSE=1) whether -DNDEBUG is passed to the compiler in 1. the CompiledNN target and 2. the main target?

from compilednn.

I don't know. Here is the output of make VERBOSE=1 and I can't find the option -DNDEBUG .

/snap/cmake/192/bin/cmake -S/home/barth/Workspace/CompiledNN -B/home/barth/Workspace/CompiledNN/_build --check-build-system CMakeFiles/Makefile.cmake 0
/snap/cmake/192/bin/cmake -E cmake_progress_start /home/barth/Workspace/CompiledNN/_build/CMakeFiles /home/barth/Workspace/CompiledNN/_build/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[1]: Entering directory '/home/barth/Workspace/CompiledNN/_build'
make -f CMakeFiles/CompiledNN.dir/build.make CMakeFiles/CompiledNN.dir/depend
make[2]: Entering directory '/home/barth/Workspace/CompiledNN/_build'
cd /home/barth/Workspace/CompiledNN/_build && /snap/cmake/192/bin/cmake -E cmake_depends "Unix Makefiles" /home/barth/Workspace/CompiledNN /home/barth/Workspace/CompiledNN /home/barth/Workspace/CompiledNN/_build /home/barth/Workspace/CompiledNN/_build /home/barth/Workspace/CompiledNN/_build/CMakeFiles/CompiledNN.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/home/barth/Workspace/CompiledNN/_build'
make -f CMakeFiles/CompiledNN.dir/build.make CMakeFiles/CompiledNN.dir/build
make[2]: Entering directory '/home/barth/Workspace/CompiledNN/_build'
make[2]: Nothing to be done for 'CMakeFiles/CompiledNN.dir/build'.
make[2]: Leaving directory '/home/barth/Workspace/CompiledNN/_build'
[ 97%] Built target CompiledNN
make -f CMakeFiles/main.dir/build.make CMakeFiles/main.dir/depend
make[2]: Entering directory '/home/barth/Workspace/CompiledNN/_build'
cd /home/barth/Workspace/CompiledNN/_build && /snap/cmake/192/bin/cmake -E cmake_depends "Unix Makefiles" /home/barth/Workspace/CompiledNN /home/barth/Workspace/CompiledNN /home/barth/Workspace/CompiledNN/_build /home/barth/Workspace/CompiledNN/_build /home/barth/Workspace/CompiledNN/_build/CMakeFiles/main.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/home/barth/Workspace/CompiledNN/_build'
make -f CMakeFiles/main.dir/build.make CMakeFiles/main.dir/build
make[2]: Entering directory '/home/barth/Workspace/CompiledNN/_build'
[ 98%] Linking CXX executable main
/snap/cmake/192/bin/cmake -E cmake_link_script CMakeFiles/main.dir/link.txt --verbose=1
/usr/bin/c++ CMakeFiles/main.dir/main.cpp.o -o main -Wl,-rpath,/home/barth/anaconda3/lib libCompiledNN.a -lpthread -lrt /home/barth/anaconda3/lib/libhdf5.so /usr/lib/x86_64-linux-gnu/librt.so -lpthread /home/barth/anaconda3/lib/libz.so /usr/lib/x86_64-linux-gnu/libdl.so -lm
CMakeFiles/main.dir/main.cpp.o: In function NeuralNetwork::CompiledNN::apply() const': main.cpp:(.text._ZNK13NeuralNetwork10CompiledNN5applyEv[_ZNK13NeuralNetwork10CompiledNN5applyEv]+0x3c): undefined reference to Assert::print(char const*, int, char const*, ...)'
main.cpp:(.text._ZNK13NeuralNetwork10CompiledNN5applyEv[_ZNK13NeuralNetwork10CompiledNN5applyEv]+0x41): undefined reference to `Assert::abort()'
collect2: error: ld returned 1 exit status
CMakeFiles/main.dir/build.make:90: recipe for target 'main' failed
make[2]: *** [main] Error 1
make[2]: Leaving directory '/home/barth/Workspace/CompiledNN/_build'
CMakeFiles/Makefile2:104: recipe for target 'CMakeFiles/main.dir/all' failed
make[1]: *** [CMakeFiles/main.dir/all] Error 2
make[1]: Leaving directory '/home/barth/Workspace/CompiledNN/_build'
Makefile:83: recipe for target 'all' failed
make: *** [all] Error 2

from compilednn.

OK, while it would have certainly been interesting to see the output of the build of CompiledNN, too (i.e. after recreating the build directory), there is something else that is interesting: CMake seems to use the HDF5 library from Anaconda (you probably do not have HDF5 installed otherwise on your system?). Due to the way CMake determines the compiler flags to use when linking with HDF5 it might be that a -DNDEBUG comes in from there into HDF5_C_DEFINITIONS, which are applied to the target CompiledNN but not to its consumers. You could verify this by either temporarily turning the PRIVATE in line 198 of CMakeLists.txt to PUBLIC or to check the output of /home/barth/anaconda3/bin/h5cc -show for -DNDEBUG.

Anyway, the solution should be to install libhdf5-dev (or whatever the HDF5 library is called in your system) and rebuild.

from compilednn.

I checked and libhdf5-dev is already installed and the output of /home/barth/anaconda3/bin/h5cc -show contains -DNDEBUG.

Here is the output of the build:
~/Workspace/CompiledNN/_build$ cmake --build .
Scanning dependencies of target CompiledNN
[ 1%] Building CXX object CMakeFiles/CompiledNN.dir/Src/CompiledNN/CompiledNN.cpp.o
[ 2%] Building CXX object CMakeFiles/CompiledNN.dir/Src/CompiledNN/Model.cpp.o
[ 4%] Building CXX object CMakeFiles/CompiledNN.dir/Src/CompiledNN/SimpleNN.cpp.o
[ 5%] Building CXX object CMakeFiles/CompiledNN.dir/Src/CompiledNN/CompiledNN/ActivationFunctions.cpp.o
[ 7%] Building CXX object CMakeFiles/CompiledNN.dir/Src/CompiledNN/CompiledNN/CompilationSettings.cpp.o
[ 8%] Building CXX object CMakeFiles/CompiledNN.dir/Src/CompiledNN/CompiledNN/Operations/Activation.cpp.o
[ 10%] Building CXX object CMakeFiles/CompiledNN.dir/Src/CompiledNN/CompiledNN/Operations/Arithmetic.cpp.o
[ 11%] Building CXX object CMakeFiles/CompiledNN.dir/Src/CompiledNN/CompiledNN/Operations/BatchNormalization.cpp.o
[ 12%] Building CXX object CMakeFiles/CompiledNN.dir/Src/CompiledNN/CompiledNN/Operations/Concatenate.cpp.o
[ 14%] Building CXX object CMakeFiles/CompiledNN.dir/Src/CompiledNN/CompiledNN/Operations/Conv2D.cpp.o
[ 15%] Building CXX object CMakeFiles/CompiledNN.dir/Src/CompiledNN/CompiledNN/Operations/Cropping2D.cpp.o
[ 17%] Building CXX object CMakeFiles/CompiledNN.dir/Src/CompiledNN/CompiledNN/Operations/DConv2D.cpp.o
[ 18%] Building CXX object CMakeFiles/CompiledNN.dir/Src/CompiledNN/CompiledNN/Operations/Dense.cpp.o
[ 20%] Building CXX object CMakeFiles/CompiledNN.dir/Src/CompiledNN/CompiledNN/Operations/GlobalPooling2D.cpp.o
[ 21%] Building CXX object CMakeFiles/CompiledNN.dir/Src/CompiledNN/CompiledNN/Operations/Im2Col2D.cpp.o
[ 22%] Building CXX object CMakeFiles/CompiledNN.dir/Src/CompiledNN/CompiledNN/Operations/Pooling2D.cpp.o
[ 24%] Building CXX object CMakeFiles/CompiledNN.dir/Src/CompiledNN/CompiledNN/Operations/Softmax.cpp.o
[ 25%] Building CXX object CMakeFiles/CompiledNN.dir/Src/CompiledNN/CompiledNN/Operations/UInt8Input.cpp.o
[ 27%] Building CXX object CMakeFiles/CompiledNN.dir/Src/CompiledNN/CompiledNN/Operations/UpSampling2D.cpp.o
[ 28%] Building CXX object CMakeFiles/CompiledNN.dir/Src/CompiledNN/CompiledNN/Operations/ZeroPadding2D.cpp.o
[ 30%] Building CXX object CMakeFiles/CompiledNN.dir/Src/CompiledNN/CompiledNN/Util/ExpApprox.cpp.o
[ 31%] Building CXX object CMakeFiles/CompiledNN.dir/3rdParty/asmjit/src/asmjit/core/arch.cpp.o
[ 32%] Building CXX object CMakeFiles/CompiledNN.dir/3rdParty/asmjit/src/asmjit/core/assembler.cpp.o
[ 34%] Building CXX object CMakeFiles/CompiledNN.dir/3rdParty/asmjit/src/asmjit/core/builder.cpp.o
[ 35%] Building CXX object CMakeFiles/CompiledNN.dir/3rdParty/asmjit/src/asmjit/core/callconv.cpp.o
[ 37%] Building CXX object CMakeFiles/CompiledNN.dir/3rdParty/asmjit/src/asmjit/core/codeholder.cpp.o
[ 38%] Building CXX object CMakeFiles/CompiledNN.dir/3rdParty/asmjit/src/asmjit/core/compiler.cpp.o
[ 40%] Building CXX object CMakeFiles/CompiledNN.dir/3rdParty/asmjit/src/asmjit/core/constpool.cpp.o
[ 41%] Building CXX object CMakeFiles/CompiledNN.dir/3rdParty/asmjit/src/asmjit/core/cpuinfo.cpp.o
[ 42%] Building CXX object CMakeFiles/CompiledNN.dir/3rdParty/asmjit/src/asmjit/core/emitter.cpp.o
[ 44%] Building CXX object CMakeFiles/CompiledNN.dir/3rdParty/asmjit/src/asmjit/core/func.cpp.o
[ 45%] Building CXX object CMakeFiles/CompiledNN.dir/3rdParty/asmjit/src/asmjit/core/globals.cpp.o
[ 47%] Building CXX object CMakeFiles/CompiledNN.dir/3rdParty/asmjit/src/asmjit/core/inst.cpp.o
[ 48%] Building CXX object CMakeFiles/CompiledNN.dir/3rdParty/asmjit/src/asmjit/core/jitallocator.cpp.o
[ 50%] Building CXX object CMakeFiles/CompiledNN.dir/3rdParty/asmjit/src/asmjit/core/jitruntime.cpp.o
[ 51%] Building CXX object CMakeFiles/CompiledNN.dir/3rdParty/asmjit/src/asmjit/core/logging.cpp.o
[ 52%] Building CXX object CMakeFiles/CompiledNN.dir/3rdParty/asmjit/src/asmjit/core/operand.cpp.o
[ 54%] Building CXX object CMakeFiles/CompiledNN.dir/3rdParty/asmjit/src/asmjit/core/osutils.cpp.o
[ 55%] Building CXX object CMakeFiles/CompiledNN.dir/3rdParty/asmjit/src/asmjit/core/ralocal.cpp.o
[ 57%] Building CXX object CMakeFiles/CompiledNN.dir/3rdParty/asmjit/src/asmjit/core/rapass.cpp.o
[ 58%] Building CXX object CMakeFiles/CompiledNN.dir/3rdParty/asmjit/src/asmjit/core/rastack.cpp.o
[ 60%] Building CXX object CMakeFiles/CompiledNN.dir/3rdParty/asmjit/src/asmjit/core/string.cpp.o
[ 61%] Building CXX object CMakeFiles/CompiledNN.dir/3rdParty/asmjit/src/asmjit/core/support.cpp.o
[ 62%] Building CXX object CMakeFiles/CompiledNN.dir/3rdParty/asmjit/src/asmjit/core/target.cpp.o
[ 64%] Building CXX object CMakeFiles/CompiledNN.dir/3rdParty/asmjit/src/asmjit/core/type.cpp.o
[ 65%] Building CXX object CMakeFiles/CompiledNN.dir/3rdParty/asmjit/src/asmjit/core/virtmem.cpp.o
[ 67%] Building CXX object CMakeFiles/CompiledNN.dir/3rdParty/asmjit/src/asmjit/core/zone.cpp.o
[ 68%] Building CXX object CMakeFiles/CompiledNN.dir/3rdParty/asmjit/src/asmjit/core/zonehash.cpp.o
[ 70%] Building CXX object CMakeFiles/CompiledNN.dir/3rdParty/asmjit/src/asmjit/core/zonelist.cpp.o
[ 71%] Building CXX object CMakeFiles/CompiledNN.dir/3rdParty/asmjit/src/asmjit/core/zonestack.cpp.o
[ 72%] Building CXX object CMakeFiles/CompiledNN.dir/3rdParty/asmjit/src/asmjit/core/zonetree.cpp.o
[ 74%] Building CXX object CMakeFiles/CompiledNN.dir/3rdParty/asmjit/src/asmjit/core/zonevector.cpp.o
[ 75%] Building CXX object CMakeFiles/CompiledNN.dir/3rdParty/asmjit/src/asmjit/x86/x86assembler.cpp.o
[ 77%] Building CXX object CMakeFiles/CompiledNN.dir/3rdParty/asmjit/src/asmjit/x86/x86builder.cpp.o
[ 78%] Building CXX object CMakeFiles/CompiledNN.dir/3rdParty/asmjit/src/asmjit/x86/x86callconv.cpp.o
[ 80%] Building CXX object CMakeFiles/CompiledNN.dir/3rdParty/asmjit/src/asmjit/x86/x86compiler.cpp.o
[ 81%] Building CXX object CMakeFiles/CompiledNN.dir/3rdParty/asmjit/src/asmjit/x86/x86features.cpp.o
[ 82%] Building CXX object CMakeFiles/CompiledNN.dir/3rdParty/asmjit/src/asmjit/x86/x86instapi.cpp.o
[ 84%] Building CXX object CMakeFiles/CompiledNN.dir/3rdParty/asmjit/src/asmjit/x86/x86instdb.cpp.o
[ 85%] Building CXX object CMakeFiles/CompiledNN.dir/3rdParty/asmjit/src/asmjit/x86/x86internal.cpp.o
[ 87%] Building CXX object CMakeFiles/CompiledNN.dir/3rdParty/asmjit/src/asmjit/x86/x86logging.cpp.o
[ 88%] Building CXX object CMakeFiles/CompiledNN.dir/3rdParty/asmjit/src/asmjit/x86/x86operand.cpp.o
[ 90%] Building CXX object CMakeFiles/CompiledNN.dir/3rdParty/asmjit/src/asmjit/x86/x86rapass.cpp.o
[ 91%] Building CXX object CMakeFiles/CompiledNN.dir/3rdParty/B-Human/Platform/BHAssert.cpp.o
[ 92%] Building CXX object CMakeFiles/CompiledNN.dir/3rdParty/B-Human/Tools/Streams/InOut.cpp.o
[ 94%] Building CXX object CMakeFiles/CompiledNN.dir/3rdParty/B-Human/Tools/Streams/InStreams.cpp.o
[ 95%] Building CXX object CMakeFiles/CompiledNN.dir/3rdParty/B-Human/Tools/Streams/SimpleMap.cpp.o
[ 97%] Linking CXX static library libCompiledNN.a
[ 97%] Built target CompiledNN
Scanning dependencies of target main
[ 98%] Building CXX object CMakeFiles/main.dir/main.cpp.o
[100%] Linking CXX executable main
CMakeFiles/main.dir/main.cpp.o: In function NeuralNetwork::CompiledNN::apply() const': main.cpp:(.text._ZNK13NeuralNetwork10CompiledNN5applyEv[_ZNK13NeuralNetwork10CompiledNN5applyEv]+0x3c): undefined reference to Assert::print(char const*, int, char const*, ...)'
main.cpp:(.text._ZNK13NeuralNetwork10CompiledNN5applyEv[_ZNK13NeuralNetwork10CompiledNN5applyEv]+0x41): undefined reference to `Assert::abort()'
collect2: error: ld returned 1 exit status
CMakeFiles/main.dir/build.make:90: recipe for target 'main' failed
make[2]: *** [main] Error 1
CMakeFiles/Makefile2:104: recipe for target 'CMakeFiles/main.dir/all' failed
make[1]: *** [CMakeFiles/main.dir/all] Error 2
Makefile:83: recipe for target 'all' failed
make: *** [all] Error 2

from compilednn.

So CMake is choosing the Anaconda-HDF5 by default. This can probably be avoided by passing -DHDF5_ROOT=/usr to CMake (-> cmake -DHDF5_ROOT=/usr ..).

from compilednn.

The build finally runs through, that solved the problem.
Thank you very much.

from compilednn.