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bhcooper's Projects

beesem icon beesem

setup.py updated to allow execution of beesem.py and formatter.py

d-wave icon d-wave

For testing out projects on the D-wave

dnashaper icon dnashaper

R package for high-throughput DNA shape predictions and feature encoding

keras_genomics icon keras_genomics

Genomics layers for Keras 2, updated for newer version of tensorflow

multi-step-align icon multi-step-align

Multi-step core-centric alignment approach for SELEX-seq as described in Cooper et al. (to be published)

tdc_evaluation icon tdc_evaluation

Detailed workflow for reproducing the tests used to evaluate the TopDownCrawl (TDC) method available at topdowncrawl.usc.edu.

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