bento-platform Goto Github PK
Name: Bento Platform
Type: Organization
Bio: A web platform to explore and share clinical and -omics data. Created by the Canadian Centre for Computational Genomics (C3G) at Montreal.
Location: Canada
Name: Bento Platform
Type: Organization
Bio: A web platform to explore and share clinical and -omics data. Created by the Canadian Centre for Computational Genomics (C3G) at Montreal.
Location: Canada
The official Bento distribution - orchestration and deployment infrastructure for the Bento platform.
Asynchronous search result aggregation service for the Bento platform.
Helper library for Bento frontends to authenticate with an OIDC IdP and authorize requests.
Permissions and authorization service for the Bento platform.
Automated Bento platform base image building.
GA4GH Beacon v2 microservice for the Bento platform
GitHub CI composite action to build development and production containers for Bento components.
Recharts wrapper for use in Bento platform front-ends
Partially synthetic demo dataset for Bento.
Drop box and basic file management service for the Bento platform.
Data repository service for the Bento platform, based on GA4GH's DRS specification.
Socket.IO event relay for the Bento platform.
OpenResty-based gateway, configuration, & continuous building for inclusion in Bento deployments.
Keycloak Docker image distribution for the Bento platform. This is only relevant if a Bento instance is responsible for running its own IdP.
Shared Python resources for Bento platform microservices.
Log-fetching microservice for the Bento platform
Notification service for the Bento platform.
A publicly accessible portal for clinical datasets, where users are able to see high-level statistics of the data available through predefined variables of interest and search the data using limited variables at a time.
Reference data (genomes & annotations) service for the Bento platform.
Microservice implementing the GA4GH Service Registry API for the Bento platform.
Variant search and GA4GH Beacon microservice for the Bento platform.
React-based data discovery and management portal for the Bento platform.
Workflow execution service (based on GA4GH WES schemas) for the Bento platform.
Command-line utility and async Python library for checksumming FASTA files and individual contigs.
Genomic Variants search API, working from the VCF format.
Embeddable genomic visualization component based on the Integrative Genomics Viewer
Phenopackets/FHIR-based metadata service for the Bento platform. Docs: https://metadata-service.readthedocs.io
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